If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ), 'gf_id' => 'HOM05D000747', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000747' ), 'data_identifier' => 'HOM05D000747', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000747', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p37100' => 'bna', 'A04p06290' => 'bna', 'A05p32580' => 'bna', 'A09p18070' => 'bna', 'A09p18090' => 'bna', 'A09p18100' => 'bna', 'A09p18110' => 'bna', 'A09p18120' => 'bna', 'A09p18130' => 'bna', 'A09p18140' => 'bna', 'Aa31LG10G330' => 'aar', 'Aa31LG10G8250' => 'aar', 'Aa31LG4G9560' => 'aar', 'Aa31LG8G4180' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.498' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1783' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2314' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3333' => 'aag', 'Actinidia08295' => 'ach', 'Actinidia08317' => 'ach', 'Actinidia10269' => 'ach', 'Actinidia18481' => 'ach', 'Actinidia19252' => 'ach', 'Actinidia19253' => 'ach', 'Actinidia21207' => 'ach', 'Actinidia21208' => 'ach', 'Actinidia21209' => 'ach', 'Actinidia21210' => 'ach', 'Actinidia21211' => 'ach', 'Actinidia21212' => 'ach', 'Actinidia21216' => 'ach', 'Actinidia21217' => 'ach', 'Actinidia21218' => 'ach', 'Actinidia21219' => 'ach', 'Actinidia29657' => 'ach', 'Actinidia31572' => 'ach', 'Actinidia31580' => 'ach', 'Actinidia31581' => 'ach', 'Actinidia33287' => 'ach', 'Actinidia33564' => 'ach', 'Actinidia35404' => 'ach', 'Actinidia35405' => 'ach', 'Actinidia37147' => 'ach', 'Actinidia37148' => 'ach', 'Actinidia37149' => 'ach', 'Actinidia37150' => 'ach', 'Actinidia37151' => 'ach', 'Ah.03g148690' => 'amhyb', 'Ah.05g171530' => 'amhyb', 'Ah.06g181550' => 'amhyb', 'Ah.07g203890' => 'amhyb', 'Ah.08g211170' => 'amhyb', 'AL1G63980' => 'aly', 'AL3G30230' => 'aly', 'AL5G33970' => 'aly', 'AL8G23550' => 'aly', 'AL947U10010' => 'aly', 'Aqoxy2G01524' => 'aox', 'Aqoxy2G02629' => 'aox', 'Aqoxy5G01343' => 'aox', 'Aqoxy5G03355' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XPG7N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V2LAF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31PRX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KGV08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62V247' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NI5NY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CI62AJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPQB8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3UT94' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I0605Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKMU7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT7QUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MMNX5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP0EZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSV5VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PS3G0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R130QB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMZ0WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YUC3W2' => 'arhy', 'AT1G55860' => 'ath', 'AT1G70320' => 'ath', 'AT3G17205' => 'ath', 'AT3G53090' => 'ath', 'ATR0665G301' => 'atr', 'ATR0693G276' => 'atr', 'ATR0767G187' => 'atr', 'ATR0800G047' => 'atr', 'Atru.chr13.975' => 'acertr', 'Atru.chr13.976' => 'acertr', 'Atru.chr13.977' => 'acertr', 'Atru.chr13.978' => 'acertr', 'Atru.chr13.979' => 'acertr', 'Atru.chr2.3698' => 'acertr', 'Atru.chr2.3699' => 'acertr', 'Atru.chr4.3105' => 'acertr', 'Atru.chr8.1679' => 'acertr', 'AUR62002590' => 'cqu', 'AUR62014369' => 'cqu', 'AUR62017118' => 'cqu', 'AUR62017119' => 'cqu', 'AUR62019112' => 'cqu', 'AUR62030014' => 'cqu', 'AUR62036471' => 'cqu', 'AUR62036472' => 'cqu', 'AUR62037922' => 'cqu', 'AUR62040177' => 'cqu', 'BcaB02g08538' => 'bca', 'BcaB02g10069' => 'bca', 'BcaB04g20855' => 'bca', 'BcaB05g23932' => 'bca', 'BcaB06g25812' => 'bca', 'BcaB07g31165' => 'bca', 'BcaB07g31166' => 'bca', 'BcaC02g09186' => 'bca', 'BcaC04g22166' => 'bca', 'BcaC04g22167' => 'bca', 'BcaC04g22169' => 'bca', 'BcaC05g28820' => 'bca', 'BcaC09g48678' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02570' => 'bna', 'BolC1t04670H' => 'bol', 'BolC4t25555H' => 'bol', 'BolC5t33665H' => 'bol', 'BolC5t33666H' => 'bol', 'BolC6t36162H' => 'bol', 'BolC9t55169H' => 'bol', 'BolC9t55170H' => 'bol', 'BolC9t55172H' => 'bol', 'BolC9t55173H' => 'bol', 'BolC9t55174H' => 'bol', 'BolC9t55175H' => 'bol', 'BolC9t55176H' => 'bol', 'BolC9t55177H' => 'bol', 'BraA01t03772Z' => 'bra', 'BraA04t16334Z' => 'bra', 'BraA05t22082Z' => 'bra', 'BraA09t37439Z' => 'bra', 'BraA09t37440Z' => 'bra', 'BraA09t37441Z' => 'bra', 'BraA09t37443Z' => 'bra', 'BraA09t37444Z' => 'bra', 'BraA09t37445Z' => 'bra', 'BraA09t37446Z' => 'bra', 'BraA09t37447Z' => 'bra', 'BraSC56t46399Z' => 'bra', 'C01p47020' => 'bna', 'C04p39810' => 'bna', 'C05p49250' => 'bna', 'C06p10770' => 'bna', 'C09p22520' => 'bna', 'C09p22530' => 'bna', 'C09p22540' => 'bna', 'C09p22560' => 'bna', 'C09p22570' => 'bna', 'C09p22580' => 'bna', 'C09p22590' => 'bna', 'C09p22600' => 'bna', 'CAN.G140.21' => 'can', 'CAN.G170.17' => 'can', 'CAN.G170.20' => 'can', 'CAN.G1830.6' => 'can', 'CAN.G193.8' => 'can', 'CAN.G3221.1' => 'can', 'CAN.G327.8' => 'can', 'CAN.G623.17' => 'can', 'CAN.G79.34' => 'can', 'CANSAT11G0765' => 'cansat', 'CANSAT78G0170' => 'cansat', 'CANSAT80G1343' => 'cansat', 'CARHR045560' => 'chi', 'CARHR092470' => 'chi', 'CARHR162940' => 'chi', 'CARHR259180' => 'chi', 'Carub.0001s4443' => 'cru', 'Carub.0003s1696' => 'cru', 'Carub.0005s1961' => 'cru', 'Carub.0005s1962' => 'cru', 'Carub.0008s0954' => 'cru', 'Ca_00947_v3' => 'car', 'Ca_00953_v3' => 'car', 'Ca_05473_v3' => 'car', 'Ca_08946_v3' => 'car', 'Ca_18240_v3' => 'car', 'Ca_18244_v3' => 'car', 'CBR_g23790' => 'cbr', 'CBR_g29892' => 'cbr', 'CBR_g50131' => 'cbr', 'CBR_g8951' => 'cbr', 'Cc03_g00480' => 'ccan', 'Cc05_g15020' => 'ccan', 'Cc06_g04900' => 'ccan', 'Cc08_g12880' => 'ccan', 'Cc10_g08380' => 'ccan', 'CDE02G2001' => 'cde', 'CDE02G2592' => 'cde', 'CDE02G4685' => 'cde', 'CDE04G0044' => 'cde', 'CDE04G1670' => 'cde', 'CDE05G0803' => 'cde', 'CDE05G1257' => 'cde', 'CDE07G0942' => 'cde', 'CDE07G1476' => 'cde', 'CDE11G0596' => 'cde', 'Cfa013814' => 'cfa', 'Cfa016498' => 'cfa', 'Cfa016908' => 'cfa', 'Cfa019871' => 'cfa', 'Cfa022938' => 'cfa', 'Cfa025428' => 'cfa', 'Cfa026247' => 'cfa', 'Ciclev10000001m.g' => 'ccl', 'Ciclev10004231m.g' => 'ccl', 'Ciclev10007219m.g' => 'ccl', 'Ciclev10010940m.g' => 'ccl', 'CiPaw.01G133500' => 'cil', 'CiPaw.07G163100' => 'cil', 'CiPaw.08G057100' => 'cil', 'CiPaw.09G006200' => 'cil', 'CiPaw.11G204500' => 'cil', 'CiPaw.12G138800' => 'cil', 'CiPaw.12G138900' => 'cil', 'ClCG06G004370' => 'cla', 'ClCG08G011550' => 'cla', 'ClCG10G004420' => 'cla', 'ClCG10G019570' => 'cla', 'COL.COLO4_00308' => 'col', 'COL.COLO4_09844' => 'col', 'COL.COLO4_22271' => 'col', 'COL.COLO4_34559' => 'col', 'COL.COLO4_35278' => 'col', 'Cpa.g.sc146.73' => 'cpa', 'Cpa.g.sc21.42' => 'cpa', 'Cpa.g.sc5.113' => 'cpa', 'Cpa.g.sc959.1' => 'cpa', 'Cre01.g012450' => 'cre', 'Cre02.g099100' => 'cre', 'Cre03.g159200' => 'cre', 'Cre06.g280300' => 'cre', 'Cre08.g364550' => 'cre', 'Cre10.g433900' => 'cre', 'Cre11.g467609' => 'cre', 'CsaV3_2G030130' => 'csa', 'CsaV3_3G004200' => 'csa', 'CsaV3_3G036630' => 'csa', 'CsaV3_5G020800' => 'csa', 'CsaV3_6G000010' => 'csa', 'CsaV3_6G020210' => 'csa', 'CsaV3_6G021240' => 'csa', 'CsaV3_6G022750' => 'csa', 'CsaV3_6G023770' => 'csa', 'CsaV3_6G026310' => 'csa', 'CsaV3_6G026330' => 'csa', 'CsaV3_6G027360' => 'csa', 'CsaV3_UNG090710' => 'csa', 'CSS0000386' => 'camsi', 'CSS0000660' => 'camsi', 'CSS0002100' => 'camsi', 'CSS0007399' => 'camsi', 'CSS0008408' => 'camsi', 'CSS0012817' => 'camsi', 'CSS0014613' => 'camsi', 'CSS0019056' => 'camsi', 'CSS0021377' => 'camsi', 'CSS0022525' => 'camsi', 'CSS0023043' => 'camsi', 'CSS0027859' => 'camsi', 'CSS0034444' => 'camsi', 'CSS0037654' => 'camsi', 'CSS0041176' => 'camsi', 'CSS0050278' => 'camsi', 'DCAR_002525' => 'dca', 'DCAR_009357' => 'dca', 'DCAR_009555' => 'dca', 'DCAR_017075' => 'dca', 'DCAR_017532' => 'dca', 'DCAR_020028' => 'dca', 'DCAR_020793' => 'dca', 'Dinv10343' => 'din', 'Dinv10344' => 'din', 'Dinv10345' => 'din', 'Dinv15128' => 'din', 'Dinv37368' => 'din', 'Dinv37369' => 'din', 'Dinv37370' => 'din', 'Dinv40863' => 'din', 'Dinv42592' => 'din', 'Dinv42593' => 'din', 'Dinv44876' => 'din', 'Dinv44877' => 'din', 'Dinv44878' => 'din', 'Duzib041G0164' => 'dzi', 'Duzib052G0753' => 'dzi', 'Duzib093G1788' => 'dzi', 'Duzib116G0124' => 'dzi', 'Duzib151G0433' => 'dzi', 'Duzib212G0904' => 'dzi', 'Duzib213G0084' => 'dzi', 'Duzib268G0898' => 'dzi', 'ECA233G1002' => 'eca', 'ECA233G3437' => 'eca', 'ECA236G3808' => 'eca', 'ECA240G4674' => 'eca', 'ECA247G1822' => 'eca', 'ECA247G4116' => 'eca', 'EL10Ac1g00487' => 'bvu', 'EL10Ac3g06290' => 'bvu', 'EL10Ac4g07551' => 'bvu', 'EL10Ac7g16731' => 'bvu', 'Eucgr.A01586' => 'egr', 'Eucgr.B03986' => 'egr', 'Eucgr.F02042' => 'egr', 'Eucgr.F02160' => 'egr', 'FAN02G3129' => 'fan', 'FAN04G1446' => 'fan', 'FAN05G2234' => 'fan', 'FAN05G4185' => 'fan', 'FAN07G0175' => 'fan', 'FAN07G1366' => 'fan', 'FAN08G0162' => 'fan', 'FAN08G0746' => 'fan', 'FAN08G1002' => 'fan', 'FAN08G2863' => 'fan', 'FAN09G3532' => 'fan', 'FAN11G1871' => 'fan', 'FAN11G2391' => 'fan', 'FAN11G2606' => 'fan', 'FAN12G0016' => 'fan', 'FAN12G0094' => 'fan', 'FAN14G4063' => 'fan', 'FAN16G1947' => 'fan', 'FAN16G1982' => 'fan', 'FAN17G0915' => 'fan', 'FAN17G1353' => 'fan', 'FAN18G0248' => 'fan', 'FAN21G2236' => 'fan', 'FAN21G2338' => 'fan', 'FAN22G2336' => 'fan', 'FAN25G0789' => 'fan', 'FAN25G2566' => 'fan', 'FAN25G3682' => 'fan', 'FvH4_3g42950' => 'fve', 'FvH4_4g20760' => 'fve', 'FvH4_5g34290' => 'fve', 'FvH4_5g35010' => 'fve', 'FvH4_6g17370' => 'fve', 'Glyma.02G216000' => 'gma', 'Glyma.03G188900' => 'gma', 'Glyma.04G096900' => 'gma', 'Glyma.05G133100' => 'gma', 'Glyma.06G098700' => 'gma', 'Glyma.07G235800' => 'gma', 'Glyma.08G087600' => 'gma', 'Glyma.09G032001' => 'gma', 'Glyma.14G183000' => 'gma', 'Glyma.15G137000' => 'gma', 'Glyma.17G037600' => 'gma', 'Glyma.19G189100' => 'gma', 'Gohir.A01G092100' => 'ghi', 'Gohir.A01G211500' => 'ghi', 'Gohir.A05G218400' => 'ghi', 'Gohir.A05G264300' => 'ghi', 'Gohir.A06G030900' => 'ghi', 'Gohir.A09G241400' => 'ghi', 'Gohir.A10G175700' => 'ghi', 'Gohir.A12G078600' => 'ghi', 'Gohir.D01G062300' => 'ghi', 'Gohir.D01G200300' => 'ghi', 'Gohir.D05G221100' => 'ghi', 'Gohir.D05G266800' => 'ghi', 'Gohir.D06G030100' => 'ghi', 'Gohir.D06G126900' => 'ghi', 'Gohir.D09G242100' => 'ghi', 'Gohir.D10G182300' => 'ghi', 'Gorai.002G100900' => 'gra', 'Gorai.002G245000' => 'gra', 'Gorai.006G265700' => 'gra', 'Gorai.009G228200' => 'gra', 'Gorai.009G278900' => 'gra', 'Gorai.010G033100' => 'gra', 'Gorai.010G148200' => 'gra', 'Gorai.011G204200' => 'gra', 'GSVIVG01000305001' => 'vvi', 'GSVIVG01009206001' => 'vvi', 'GSVIVG01009208001' => 'vvi', 'GSVIVG01014697001' => 'vvi', 'GSVIVG01014698001' => 'vvi', 'GSVIVG01030347001' => 'vvi', 'GSVIVG01030902001' => 'vvi', 'GSVIVG01033734001' => 'vvi', 'GSVIVG01034942001' => 'vvi', 'HanXRQChr02g0045911' => 'han', 'HanXRQChr03g0073991' => 'han', 'HanXRQChr05g0163491' => 'han', 'HanXRQChr06g0182841' => 'han', 'HanXRQChr10g0299121' => 'han', 'HanXRQChr11g0335731' => 'han', 'HanXRQChr13g0400251' => 'han', 'HanXRQChr13g0408401' => 'han', 'Haze_00834' => 'cav', 'Haze_09836' => 'cav', 'Haze_19502' => 'cav', 'Haze_22488' => 'cav', 'Hma1.2p1_0010F.1_g006490' => 'hma', 'Hma1.2p1_0010F.1_g006500' => 'hma', 'Hma1.2p1_0125F.1_g058695' => 'hma', 'Hma1.2p1_0321F.1_g124060' => 'hma', 'Hma1.2p1_0564F.1_g179090' => 'hma', 'Hma1.2p1_0564F.1_g179100' => 'hma', 'Hma1.2p1_1096F.1_g256630' => 'hma', 'HPP92_009974' => 'vpl', 'HPP92_009997' => 'vpl', 'HPP92_010010' => 'vpl', 'HPP92_010012' => 'vpl', 'HPP92_010039' => 'vpl', 'HPP92_015200' => 'vpl', 'HPP92_015256' => 'vpl', 'HPP92_015992' => 'vpl', 'HPP92_015993' => 'vpl', 'HPP92_015995' => 'vpl', 'HPP92_023769' => 'vpl', 'HPP92_023770' => 'vpl', 'HPP92_024547' => 'vpl', 'HPP92_024548' => 'vpl', 'HPP92_024549' => 'vpl', 'HPP92_024550' => 'vpl', 'HPP92_024551' => 'vpl', 'HPP92_026406' => 'vpl', 'HPP92_026407' => 'vpl', 'HPP92_026408' => 'vpl', 'HPP92_026409' => 'vpl', 'Hund12236' => 'sun', 'Hund20720' => 'sun', 'Hund20723' => 'sun', 'Hund20725' => 'sun', 'Hund23101' => 'sun', 'Hund26826' => 'sun', 'Hund28791' => 'sun', 'Hund28792' => 'sun', 'Lalb_Chr01g0018491' => 'lal', 'Lalb_Chr04g0252751' => 'lal', 'Lalb_Chr04g0252761' => 'lal', 'Lalb_Chr07g0188331' => 'lal', 'Lalb_Chr08g0242601' => 'lal', 'Lalb_Chr11g0064861' => 'lal', 'Lalb_Chr12g0209101' => 'lal', 'Lalb_Chr15g0089041' => 'lal', 'Lalb_Chr17g0344621' => 'lal', 'Lalb_Chr23g0269951' => 'lal', 'Lalb_Chr23g0269961' => 'lal', 'Lj1C891T9' => 'lonja', 'Lj1g0021401' => 'lja', 'Lj1g0024972' => 'lja', 'Lj2A125G61' => 'lonja', 'Lj2A125G62' => 'lonja', 'Lj2C125G13' => 'lonja', 'Lj3A836G20' => 'lonja', 'Lj3A836G21' => 'lonja', 'Lj3C755T2' => 'lonja', 'Lj4C86T7' => 'lonja', 'Lj4g0006906' => 'lja', 'Lj6g0013861' => 'lja', 'LjContig00408g0027979' => 'lja', 'Lsat_1_v5_gn_1_108300' => 'lsa', 'Lsat_1_v5_gn_1_2001' => 'lsa', 'Lsat_1_v5_gn_1_98400' => 'lsa', 'Lsat_1_v5_gn_4_100660' => 'lsa', 'Lsat_1_v5_gn_4_84440' => 'lsa', 'Lsat_1_v5_gn_5_159520' => 'lsa', 'Lsat_1_v5_gn_5_51100' => 'lsa', 'Lsat_1_v5_gn_6_107301' => 'lsa', 'Lsat_1_v5_gn_6_107380' => 'lsa', 'Lsat_1_v5_gn_6_29141' => 'lsa', 'Lsat_1_v5_gn_6_70541' => 'lsa', 'Lsat_1_v5_gn_8_95561' => 'lsa', 'Lsat_1_v5_gn_9_68121' => 'lsa', 'Lsat_1_v5_gn_9_88720' => 'lsa', 'Manes.03G208600' => 'mes', 'Manes.05G189200' => 'mes', 'Manes.08G017600' => 'mes', 'Manes.15G059000' => 'mes', 'Manes.18G057015' => 'mes', 'Mapoly0017s0029' => 'mpo', 'Mapoly0088s0076' => 'mpo', 'Mapoly0090s0059' => 'mpo', 'Mapoly0109s0016' => 'mpo', 'Mapoly0111s0008' => 'mpo', 'Mapoly0140s0005' => 'mpo', 'MBI01_g23228_MAGBIO' => 'mbi', 'MBI01_g24434_MAGBIO' => 'mbi', 'MBI02_g29873_MAGBIO' => 'mbi', 'MBI16_g07279_MAGBIO' => 'mbi', 'MBI16_g27902_MAGBIO' => 'mbi', 'MBI18_g27389_MAGBIO' => 'mbi', 'MCO03G014' => 'mco', 'MCO03G160' => 'mco', 'MCO12G137' => 'mco', 'MCO12G487' => 'mco', 'MCO14G164' => 'mco', 'MCO16G050' => 'mco', 'MCO16G275' => 'mco', 'MD03G1027100' => 'mdo', 'MD08G1203000' => 'mdo', 'MD08G1203200' => 'mdo', 'MD11G1031000' => 'mdo', 'MD12G1101300' => 'mdo', 'MD13G1148100' => 'mdo', 'MD14G1095600' => 'mdo', 'MD15G1388600' => 'mdo', 'MD16G1147900' => 'mdo', 'MD16G1148200' => 'mdo', 'MD16G1155700' => 'mdo', 'MD17G1270000' => 'mdo', 'Medtr2g033040' => 'mtr', 'Medtr2g033055' => 'mtr', 'Medtr2g033080' => 'mtr', 'Medtr3g099777' => 'mtr', 'Medtr4g094705' => 'mtr', 'Medtr4g094708' => 'mtr', 'Medtr5g066710' => 'mtr', 'Medtr7g103210' => 'mtr', 'MELO3C009417.2' => 'cme', 'MELO3C011072.2' => 'cme', 'MELO3C014115.2' => 'cme', 'MELO3C021252.2' => 'cme', 'MELO3C034878.2' => 'cme', 'Migut.G00024' => 'egut', 'Migut.L01736' => 'egut', 'Migut.L01759' => 'egut', 'Migut.M01647' => 'egut', 'MSTRG.10174' => 'ama', 'MSTRG.24981' => 'ama', 'MSTRG.7001' => 'ama', 'Nitab4.5_0000131g0010' => 'nta', 'Nitab4.5_0001334g0030' => 'nta', 'Nitab4.5_0001334g0040' => 'nta', 'Nitab4.5_0001637g0030' => 'nta', 'Nitab4.5_0003554g0010' => 'nta', 'Nitab4.5_0004583g0110' => 'nta', 'Nitab4.5_0005403g0020' => 'nta', 'Nitab4.5_0006545g0010' => 'nta', 'Nitab4.5_0007779g0030' => 'nta', 'Nitab4.5_0009446g0010' => 'nta', 'Nn1g03156' => 'nnu', 'Nn1g04324' => 'nnu', 'Nn1g05645' => 'nnu', 'Nn1g07530' => 'nnu', 'Nn3g21805' => 'nnu', 'Nn5g27341' => 'nnu', 'Nn5g28236' => 'nnu', 'Nn5g29819' => 'nnu', 'Nn5g29957' => 'nnu', 'Nn6g35131' => 'nnu', 'Nn8g39805' => 'nnu', 'Nn8g39844' => 'nnu', 'Oeu005482.1' => 'oeu', 'Oeu005956.1' => 'oeu', 'Oeu031931.1' => 'oeu', 'Oeu038170.1' => 'oeu', 'Oeu040883.2' => 'oeu', 'Oeu045250.1' => 'oeu', 'Oeu052157.1' => 'oeu', 'Os03g0683866' => 'osa', 'Os03g0683900' => 'osa', 'Os05g0159000' => 'osa', 'Os06g0148250' => 'osa', 'Os09g0252700' => 'osa', 'Os09g0252800' => 'osa', 'Os12g0428600' => 'osa', 'Peaxi162Scf00126g01514' => 'pax', 'Peaxi162Scf00139g00125' => 'pax', 'Peaxi162Scf00500g00219' => 'pax', 'Peaxi162Scf01112g00136' => 'pax', 'PGR004G0414' => 'pgr', 'PGR031G1986' => 'pgr', 'PGR031G3206' => 'pgr', 'PGR083G1157' => 'pgr', 'PGSC0003DMG401022274' => 'stu', 'PGSC0003DMG402022274' => 'stu', 'Phvul.001G184300' => 'pvu', 'Phvul.002G189700' => 'pvu', 'Phvul.003G118500' => 'pvu', 'Phvul.004G005500' => 'pvu', 'Phvul.004G009400' => 'pvu', 'Phvul.006G120900' => 'pvu', 'Phvul.008G183200' => 'pvu', 'Phvul.009G034900' => 'pvu', 'Phvul.010G047100' => 'pvu', 'Potri.001G368600' => 'ptr', 'Potri.002G110500' => 'ptr', 'Potri.008G101300' => 'ptr', 'Potri.010G150000' => 'ptr', 'Potri.011G094100' => 'ptr', 'Potri.016G096500' => 'ptr', 'Pp3c10_21040' => 'ppa', 'Pp3c11_25020' => 'ppa', 'Pp3c16_5120' => 'ppa', 'Pp3c17_16520' => 'ppa', 'Pp3c24_710' => 'ppa', 'Pp3c25_6380' => 'ppa', 'Pp3c5_10600' => 'ppa', 'Pp3c6_23490' => 'ppa', 'Pp3c7_8070' => 'ppa', 'Pp3c7_8076' => 'ppa', 'PRCOL_00000795' => 'pco', 'PRCOL_00002563' => 'pco', 'PRCOL_00003786' => 'pco', 'PRCOL_00003905' => 'pco', 'PRCOL_00004346' => 'pco', 'PRCOL_00004930' => 'pco', 'Prupe.1G111600' => 'ppe', 'Prupe.1G535000' => 'ppe', 'Prupe.6G024400' => 'ppe', 'Prupe.7G121800' => 'ppe', 'Psat0s2197g0280' => 'psa', 'Psat0s2502g0120' => 'psa', 'Psat1g162680' => 'psa', 'Psat2g064840' => 'psa', 'Psat3g037640' => 'psa', 'Psat5g049800' => 'psa', 'Psat6g178920' => 'psa', 'Psat7g085720' => 'psa', 'Psat7g185600' => 'psa', 'Psat7g185760' => 'psa', 'PSO017G1515' => 'pso', 'PSO170G1658' => 'pso', 'PSO170G3295' => 'pso', 'PSO210G0754' => 'pso', 'PSO210G6954' => 'pso', 'PSO339G2608' => 'pso', 'PSO339G4004' => 'pso', 'PSO541G0267' => 'pso', 'PSO675G3434' => 'pso', 'PSO761G0701' => 'pso', 'PSO801G0354' => 'pso', 'QL01p000777' => 'qlo', 'QL06p013303' => 'qlo', 'QL07p041161' => 'qlo', 'QL08p003927' => 'qlo', 'QL09p018620' => 'qlo', 'RcHm_v2.0_Chr3g0471541' => 'rch', 'RcHm_v2.0_Chr4g0387901' => 'rch', 'RcHm_v2.0_Chr4g0426201' => 'rch', 'RcHm_v2.0_Chr5g0077001' => 'rch', 'RcHm_v2.0_Chr6g0244951' => 'rch', 'RcHm_v2.0_Chr7g0182321' => 'rch', 'RcHm_v2.0_Chr7g0217651' => 'rch', 'RcHm_v2.0_Chr7g0234861' => 'rch', 'Rhsim03G0085000' => 'rsi', 'Rhsim04G0012200' => 'rsi', 'Rhsim04G0243000' => 'rsi', 'Rhsim07G0213300' => 'rsi', 'Sabra02G0087000' => 'sbr', 'Sabra08G0076600' => 'sbr', 'Sabra10G0115600' => 'sbr', 'Sabra16G0100500' => 'sbr', 'Sabra16G0241700' => 'sbr', 'SalBow5G3738' => 'sbo', 'SalBow7G0174' => 'sbo', 'SalBow8G1635' => 'sbo', 'SalBow8G1875' => 'sbo', 'SalBow8G2156' => 'sbo', 'SalBow8G3583' => 'sbo', 'SalBow8G3694' => 'sbo', 'SalBow8G4314' => 'sbo', 'Sc02g0001290' => 'sci', 'Sc03g0006760' => 'sci', 'Sc03g0011480' => 'sci', 'Sc15g0003080' => 'sci', 'Sc25g0001570' => 'sci', 'Sed0003045' => 'sed', 'Sed0005984' => 'sed', 'Sed0006720' => 'sed', 'Sed0015542' => 'sed', 'Sed0017501' => 'sed', 'Sed0020895' => 'sed', 'SEGI_09577' => 'sgi', 'SEGI_10423' => 'sgi', 'SEGI_11758' => 'sgi', 'SEGI_11859' => 'sgi', 'SEGI_13338' => 'sgi', 'SEGI_16163' => 'sgi', 'SEGI_17387' => 'sgi', 'SEGI_19221' => 'sgi', 'SEGI_19597' => 'sgi', 'SEGI_31913' => 'sgi', 'SEGI_35022' => 'sgi', 'SEGI_41270' => 'sgi', 'SGA_v2.0_scaffold14G07075' => 'sas', 'SGA_v2.0_scaffold157G37358' => 'sas', 'SGA_v2.0_scaffold168G38567' => 'sas', 'SGA_v2.0_scaffold171G38855' => 'sas', 'SGA_v2.0_scaffold277G46716' => 'sas', 'SGA_v2.0_scaffold64G22058' => 'sas', 'SGA_v2.0_scaffold74G24548' => 'sas', 'SHI00089' => 'shi', 'SHI00090' => 'shi', 'SHI00091' => 'shi', 'SHI00092' => 'shi', 'SHI00093' => 'shi', 'SHI26483' => 'shi', 'SHI27760' => 'shi', 'SHI27767' => 'shi', 'SMO119G0395' => 'smo', 'SMO137G0018' => 'smo', 'SMO165G0153' => 'smo', 'SMO197G0019' => 'smo', 'SMO266G0048' => 'smo', 'SMO364G0023' => 'smo', 'SMO367G0244' => 'smo', 'Solyc01g057900.3' => 'sly', 'Solyc04g076620.4' => 'sly', 'Solyc07g065630.4' => 'sly', 'Solyc09g008700.2' => 'sly', 'Sopen01g023220' => 'spe', 'Sopen04g030340' => 'spe', 'Sopen07g033840' => 'spe', 'Sopen09g003500' => 'spe', 'Sp1g41460' => 'spa', 'Sp3g15400' => 'spa', 'Sp5g09230' => 'spa', 'Sp6g10940' => 'spa', 'TAR256G0007' => 'tar', 'TAR256G0008' => 'tar', 'TAR362G0993' => 'tar', 'TAR381G0008' => 'tar', 'TAR624G0765' => 'tar', 'TAR625G1466' => 'tar', 'TAR626G0075' => 'tar', 'TAR626G0197' => 'tar', 'TAR633G1427' => 'tar', 'TAR633G1529' => 'tar', 'THA.LOC104799856' => 'tha', 'THA.LOC104815693' => 'tha', 'THA.LOC104820321' => 'tha', 'THA.LOC104822729' => 'tha', 'THA.LOC104827502' => 'tha', 'Thecc.04G307300' => 'tca', 'Thecc.05G077000' => 'tca', 'Thecc.07G012100' => 'tca', 'Thecc.08G073800' => 'tca', 'Thhalv10010078m.g' => 'esa', 'Thhalv10011171m.g' => 'esa', 'Thhalv10011172m.g' => 'esa', 'Thhalv10019984m.g' => 'esa', 'TPR.G10108' => 'tpr', 'TPR.G30874' => 'tpr', 'TPR.G31239' => 'tpr', 'TPR.G31502' => 'tpr', 'TPR.G34381' => 'tpr', 'TPR.G6372' => 'tpr', 'TWI12G0371' => 'twi', 'TWI38G1048' => 'twi', 'TWI38G2292' => 'twi', 'TWI53G1735' => 'twi', 'TWI56G1479' => 'twi', 'TWI74G1020' => 'twi', 'unitig_60.g25799' => 'ugi', 'unitig_62.g23303' => 'ugi', 'unitig_62.g23304' => 'ugi', 'unitig_88.g27698' => 'ugi', 'unitig_88.g27699' => 'ugi', 'vmacro04636' => 'vma', 'vmacro07348' => 'vma', 'vmacro07974' => 'vma', 'vmacro09645' => 'vma', 'VMungo1215G1053' => 'vmu', 'VMungo1309G1015' => 'vmu', 'VMungo1309G2905' => 'vmu', 'VMungo1383G3016' => 'vmu', 'Zm00001eb069230' => 'zma', 'Zm00001eb083730' => 'zma', 'Zm00001eb094520' => 'zma', 'Zm00001eb133420' => 'zma', 'Zm00001eb217270' => 'zma', 'Zm00001eb219980' => 'zma', 'Zm00001eb282520' => 'zma', 'Zm00001eb409870' => 'zma', 'Zm00001eb412620' => 'zma' ) $gf_id = 'HOM05D000747' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000747' ) $data_identifier = 'HOM05D000747' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 29, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 7, 'csa' => (int) 13, 'camsi' => (int) 16, 'dca' => (int) 7, 'din' => (int) 13, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 21, 'sun' => (int) 8, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 14, 'mes' => (int) 5, 'mpo' => (int) 6, 'mbi' => (int) 6, 'mco' => (int) 7, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 6, 'ppa' => (int) 10, 'pco' => (int) 6, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 7, 'shi' => (int) 8, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412620' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1